| R. Lewis Dark:
The $1,000 Genome and Laboratory Testing
IT WAS 1953 WHEN JAMES D.WATSON AND FRANCIS CRICK, working from X-ray
data collected by Rosalind Franklin, described the double helix structure of
the DNA molecule. That discovery inspired scientists to begin investigating
the genetic basis of life.
In the 56 years since Watson and Crick published their findings, there has
been steady progress at cracking open the human genome. One useful
marker for this progress is the declining expenses required to sequence a base
pair of DNA. In 1990, it cost $10 to sequence one base pair of DNA.
Currently, Knome, Inc., says it will sell a whole genome sequence to anyone
for $20,000. That represents a cost of $0.0003 per base pair of DNA.
But wait! That's not all... Complete Genomics, Inc., is selling a whole
human genome for $20,000. That is a further reduction of 80% in the cost
to sequence one base pair of DNA. (See pages 13-16.) These two examples
demonstrate that both the cost and time required to sequence the entire
human genome are rapidly falling to the goal of $1,000 and one hour.
I predict this will have a profound effect on laboratory medicine as we
know it today. For the first time in human history, it will be economically
feasible and scientifically possible to sequence the entire genome of individual
humans. As many of you are aware, this is expected to revolutionize the
prescription drug industry. It will also play a role in helping physicians make
pre-symptomatic diagnoses for a variety of diseases.
But, it is the second application of cheap, fast, accurate gene sequencing
that will be disruptive to pathology and laboratory testing as we know it
today. Imagine the ability to use a lab-on-a-chip, operated within a handheld
device, to do sophisticated molecular analysis of a patient's specimen,
for pennies per gene, that produces highly sensitive results in minutes.
Tome, this is themore significant point about the race to the $1,000 whole
human genome, sequenced in one hour or less. The same technologies which
enable this achievement will be downsized and miniaturized for the express
purpose of supporting sophisticated molecular assays to be performed in clinical
laboratories, physicians' offices, point-of-care (POC) settings, and maybe
even for patient self-test purposes. Although this will be disruptive to existing
clinical and business models for pathology and clinical lab testing, it will also
create tremendous new opportunities for the pathology profession.
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Costs Falling Swiftly for Whole Genome Sequence
Complete Genomics says it is now selling
$20,000 sequences to researchers and pharma
CEO SUMMARY: Several companies want to be first to
achieve the holy grail in sequencing: an accurate whole human
genome sequence produced in an hour for $1,000. Complete
Genomics announced earlier this month that it could sequence
the full human genome for a materials cost of $4,400 (not
including labor and overhead). Another competitor, Illumina, is
selling whole genome sequences for $48,000 to private individuals-
and has customers!
Explaining Certification Versus Accreditation
ISO standards make it important for labs
to understand the meaning of each term
CEO SUMMARY: Early signs are that the quality management
systems (QMS) most likely to find favor with hospitals
and clinical laboratories in the United States will be those that
meet standards developed by the International Organization
for Standardization (ISO. Many hospitals and clinical labs are
considering adopting ISO 9001 or ISO 15189, respectively. As
they do, it will be important to understand how the terms
"accreditation," "certification," and "registration" are used in
the application of standards published by ISO.
Geisinger's Use of EHR Creates
Opportunity for Lab to Add Value
Integrated EHR allows clinicians to use lab test data to greater effect
CEO SUMMARY: Every health reform proposal
makes it a high priority to implement a
universal electronic medical record (EHR).
Because lab test data is the essential component
of a successful EHR, laboratory managers
and pathologists may soon have a once-in-alifetime
opportunity to use EHR implementation
to boost the value to lab testing services. This is
exactly what the laboratory at Geisinger Health
has achieved in the 15 years since the system
first implemented its integrated EHR solution.
Molecular Update: "Liked the Product-Bought the Company,"
BD Acquires HandyLab and Jaguar System
Health IT Update: Xerox, Dell, and Hewlett-Packard
Each Buy Into IT Outsourcing Market
Growth opportunities are expected in outsourcing
of information technology services to providers
INTELLIGENCE: Late & Latent
TRANSITIONS
Aperio Technologies, Inc., of
Vista, California,MORE ON: Fraud
The criminal complaint states
that Adeyemi stole the identities
of more than 150 of his coworkers.
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